Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
THYM rs6849997 chr4:12551722 A/G 9.42E-7 119 38.33 57.27 12.78 KM Plot
THYM rs6874507 chr5:72771543 T/A 8.17E-7 115 42.9 46.43 8.52 KM Plot
THYM rs6881769 chr5:180124975 C/T 0 117 46.43 30.27 4.13 KM Plot
THYM rs6886483 chr5:180122659 A/C 0 118 46.27 30.27 4.13 KM Plot
THYM rs6901971 chr6:117114403 G/A 6.17E-5 114 19.03 50.97 39.75 KM Plot
THYM rs6963784 chr7:76131812 C/G 2.94E-5 117 39.5 46.23 28.43 KM Plot
THYM rs6981154 chr8:50182616 G/A 2.69E-10 118 46.07 51.53 25.83 KM Plot
THYM rs6989237 chr8:50222788 A/G 6.07E-10 119 46.6 49.75 26.52 KM Plot
THYM rs6991368 chr8:50098097 A/T 8.18E-10 119 46.6 49.75 24.87 KM Plot
THYM rs6991369 chr8:50098099 A/G 8.18E-10 119 46.6 49.75 24.87 KM Plot
THYM rs6992172 chr8:50184763 G/C 2.69E-10 118 46.07 51.53 25.83 KM Plot
THYM rs7002893 chr8:4665215 G/A 1.73E-8 117 42.25 38.95 12.63 KM Plot
THYM rs7007122 chr8:50109559 C/T 2.31E-10 119 46.27 50.1 25.83 KM Plot
THYM rs700965 chr9:98511138 A/G 4.72E-5 119 32.7 51.23 38.33 KM Plot
THYM rs700967 chr9:98507513 A/C 1.33E-5 119 40.67 44.5 33.78 KM Plot